Logo by yv3 - Contribute your own Logo!

END OF AN ERA, FRACTALFORUMS.COM IS CONTINUED ON FRACTALFORUMS.ORG

it was a great time but no longer maintainable by c.Kleinhuis contact him for any data retrieval,
thanks and see you perhaps in 10 years again

this forum will stay online for reference
News: Follow us on Twitter
 
*
Welcome, Guest. Please login or register. March 29, 2024, 11:20:00 AM


Login with username, password and session length


The All New FractalForums is now in Public Beta Testing! Visit FractalForums.org and check it out!


Pages: [1]   Go Down
  Print  
Share this topic on DiggShare this topic on FacebookShare this topic on GoogleShare this topic on RedditShare this topic on StumbleUponShare this topic on Twitter
Author Topic: Re: Voxel image stack and then what?  (Read 1601 times)
0 Members and 1 Guest are viewing this topic.
SABLE
Forums Newbie
*
Posts: 8


« on: March 11, 2015, 11:57:51 PM »

Hey Guys,

Was wondering if anyone here could help me out with fixing this error i get by trying to import a image sequence.

I went through the posts but couldn't find a similar problem..



so i tried a new one, the default mandelbulb without changing any preferences.

Use voxelstack, saved it in a folder on my desktop, nothing in there besides the .png's.

Tried to make an animation of it in sequimago and it works fine,

In Fiji i choose file, import, image sequence. Open the folder and the error pops up.

I work on mac, yosemite, have the latest Java installed so really don't have a clue.

I also tried changing the file names to 1.png, 2.png, 3.png..

This is the error i get.

---

(Fiji Is Just) ImageJ 2.0.0-rc-25/1.49p; Java 1.6.0_65 [64-bit]; Mac OS X 10.10; 34MB of 3333MB (1%)
 
java.lang.ArithmeticException: / by zero
   at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:226)
   at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)
   at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:304)
   at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:208)
   at io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:225)
   at io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:191)
   at io.scif.img.ImgOpener.read(ImgOpener.java:805)
   at io.scif.img.ImgOpener.read(ImgOpener.java:790)
   at io.scif.img.ImgOpener.read(ImgOpener.java:771)
   at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:758)
   at io.scif.img.ImgOpener.openImgs(ImgOpener.java:361)
   at io.scif.img.ImgOpener.openImgs(ImgOpener.java:257)
   at io.scif.img.ImgOpener.openImgs(ImgOpener.java:146)
   at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:123)
   at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:109)
   at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:75)
   at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
   at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
   at net.imagej.legacy.DefaultLegacyHooks.interceptOpenImage(DefaultLegacyHooks.java:336)
   at ij.plugin.FolderOpener.run(FolderOpener.java:114)
   at ij.IJ.runPlugIn(IJ.java:169)
   at ij.Executer.runCommand(Executer.java:131)
   at ij.Executer.run(Executer.java:64)
   at java.lang.Thread.run(Thread.java:695)

 cry
Logged
thargor6
Fractal Molossus
**
Posts: 789



WWW
« Reply #1 on: March 12, 2015, 12:51:42 AM »

I don't know how to resolve the problem with Fiji, but you can also use JWildfire to create meshes from a Voxel stack, it may need more memory (not sure), but is much faster and has more options regarding this.
To do this, enter the "3DMesh Generation"-tab, and then the "Mesh generation"-tab, and press "Load sequence".
But please note that your frame-names must be in zero-padded format (e.g. "pic0001.png", ... and not "pic1.png")

Andreas
Logged
SABLE
Forums Newbie
*
Posts: 8


« Reply #2 on: March 12, 2015, 05:30:56 PM »

Thx a lot Andreas,

i'll will be trying this out tonight and let you know.



Logged
Pages: [1]   Go Down
  Print  
 
Jump to:  


Powered by MySQL Powered by PHP Powered by SMF 1.1.21 | SMF © 2015, Simple Machines

Valid XHTML 1.0! Valid CSS! Dilber MC Theme by HarzeM
Page created in 0.134 seconds with 29 queries. (Pretty URLs adds 0.004s, 2q)