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Greetings,
I generated the left and right frames for this short animation using a branch of my Apophymator script running in Apophysis 3D or 7X, I forget which.
There is a lot I don't understand about stereoscopic videos.  I think I've seen a term "stereo window", and I think I have that all wrong in particular, at least in several places in this animation.  Several times, the object-thing in the animation appears to try to escape beyond the viewing frame.  Those segments make it a little more difficult to maintain the correct cross-eyed focus. 
Aside from that I was fairly happy with the result.
YouTube chews the animation up considerably - but if you have an interest you can download the original video from Mediafire:
http://www.mediafire.com/download.php?k6aewb7whfjuh0n

Here's the YouTube version:

<a href="http://www.youtube.com/v/tcdLV2Ds_EE&rel=1&fs=1&hd=1" target="_blank">http://www.youtube.com/v/tcdLV2Ds_EE&rel=1&fs=1&hd=1</a>